Publications and Presentations

Our team has been busy supporting the challenges of real-time epidemic science, particularly pertaining to the COVID-19 pandemic.

 

Publications and Preprints

[113] The durability of natural infection and vaccine-induced immunity against future infection by SARS-CoV-2. PNAS. July 15;119(31):e2204336119. Townsend J, Hassler H, Sah P, Dornburg A (2022)

[112] Combining Theory and Data-driven Approaches for Epidemic Forecast. Knowledge-guided Machine Learning: Accelerating Discovery using Scientific Knowledge and Data. Karpatne, Kannan, Kumar (Eds), CRC Press. Wang L, Adiga A, Chen J, Lewis B, Sadilek A, Venkatramanan S, Marathe M (2022)

[111] Data-driven Agent-based Models for Optimal Evacuation of Large Metropolitan Areas for Improved Disaster Planning. Proceedings of the 21st International Conference on Autonomous Agents and Multiagent Systems. May 9;1639-1641. Islam KA, Marathe M, Mortveit H, Swarup S, Vullikanti A (2022)

[110] Theoretical Models and Preliminary Results for Contact Tracing and Isolation. Proceedings of the 21st International Conference on Autonomous Agents and Multiagent Systems. May 9;1672-1674. Li GZ, Haddadan A, Li A, Marathe M, Srinivasan A, Vullikanti A, Zhao Z (2022)

[109] Deploying Vaccine Distribution Sites for Improved Accessibility and Equity to Support Pandemic Response. arXiv:2202.04705. To appear in Proceedings of the AAMAS 2022. Feb 9. Li G, Li A, Marathe M, Srinivasan A, Tsepenekas L, Vullikanti A (2022)  Best Student Paper Award.

[108] Heterogeneous Adaptive Behavioral Responses May Increase Epidemic Burden. ResearchGate Preprint. Jan 28. Espinoza B, Swarup S, Barrett C, Marathe M (2022)

[107] Impact of weeknight and weekend curfews using mobility data: a case study of Bengaluru urban. medRxiv. Jan 28. Adiga A, Athreya S, Marathe M, Midthala J, Rathod N, Sundaresan R, Venkataramanan S, Yasodharan S (2022)

[106] Projecting the seasonality of endemic COVID-19. medRxiv. Jan 28. Townsend J, Lamb A, Hassler H, Sah P, Alvarez-Nishio A, Nguyen C, Galvani A, Dornburg A (2022)

[105] Fundamental limitations on efficiently forecasting certain epidemic measures in network models. Proceedings of the National Academy of Sciences. Jan 25;119(4). Rosenkrantz D, Vullikanti A, Ravi SS, Stearns R, Levin S, Poor HV, Marathe M (2022)

[104] SARS-CoV-2 Testing Strategies for Outbreak Mitigation in Vaccinated Populations. medRxiv. Jan 1. Kumar C, Balasubramanian R, Ongarello S, Carmona S, Laxminarayan R (2022)

[103] A Markov Decision Process Framework for Efficient and Implementable Contact Tracing and Isolation. arXiv:2112.15547. Dec 31. Li G, Haddadan A, Li A, Marathe M, Srinivasan A, Vullikanti A, Zhao Z (2021)

[102] All-cause mortality during the COVID-19 pandemic in Chennai, India: an observational study. The Lancet Infectious Diseases. Dec 22. Lewnard J, Mahmud A, Narayan T, Wahl B, Selvavinayagam T, Laxminarayan R (2021)

[101] The durability of immunity against reinfection by SARS-CoV-2: a comparative evolutionary study. The Lancet Microbe. Dec 1;2(12):e666-75. Townsend J, Hassler H, Wang Z, Miura S, Singh J, Kumar S, Ruddle N, Galvani A, Dornburg A (2021)

[100] Earthquake Nowcasting with Deep Learning. arXiv:2201.01869. Dec 18. Fox G, Rundle J, Donnellan A, Feng B (2021)

[99] AI-Driven Agent-Based Models to Study the Role of Vaccine Acceptance in Controlling COVID-19 Spread in the US. Proceedings of the 2021 IEEE International Conference on Big Data (Big Data) Dec 15;1566-1574. Bhattacharya P, Machi D, Chen J, Hoops S, Lewis B, Mortveit H, Venkatramanan S, Wilson M, Marathe A, Porebski P, Klahn B (2021)

[98] On Efficient Design of Pilot Experiment for Generalized Linear Models. Journal of Statistical Theory and Practice. Dec 15; (4):1-21. Li Y, Deng X (2021)

[97] Link recommendation algorithms and dynamics of polarization in online social networks. Proceedings of the National Academy of Sciences. Dec 14;118(50). Santos F, Lelkes Y, Levin S (2021)

[96] M2p2: Multimodal persuasion prediction using adaptive fusion. IEEE Transactions on Multimedia. Dec 9. Bai C, Chen H, Kumar S, Leskovec J, Subrahmanian V (2021)

[95] Modeling Heterogeneous Hierarchies with Relation-specific Hyperbolic Cones. Advances in Neural Information Processing Systems. Dec 6;34. Bai Y, Ying Z, Ren H, Leskovec J (2021)

[94] Neural Distance Embeddings for Biological Sequences. Advances in Neural Information Processing Systems. Dec 6;34. Corso G, Ying Z, Pándy M, Veličković P, Leskovec J, Liò P (2021)

[93] Combiner: Full attention transformer with sparse computation cost. Advances in Neural Information Processing Systems. Dec 6;34. Ren H, Dai H, Dai Z, Yang M, Leskovec J, Schuurmans D, Dai B (2021)

[92] When in Doubt: Neural Non-Parametric Uncertainty Quantification for Epidemic Forecasting. Advances in Neural Information Processing Systems. Dec 6;34. Kamarthi H, Kong L, Rodríguez A, Zhang C, Prakash BA (2021)

[91] The durability of immunity against reinfection by SARS-CoV-2: a comparative evolutionary study. The Lancet Microbe. Dec 1;2(12):e666-75. Townsend J, Hassler H, Wang Z, Miura S, Singh J, Kumar S, Ruddle N, Galvani A, Dornburg A (2021)

[90] SARS-CoV-2 infection and mortality during the first epidemic wave in Madurai, south India: a prospective, active surveillance study. The Lancet Infectious Diseases. Dec 1;21(12):1665-76. Laxminarayan R, Vinay T, Kumar K, Wahl B, Lewnard J (2021)

[89] Theoretical and computational characterizations of interaction mechanisms on Facebook dynamics using a common knowledge model. Social Network Analysis and Mining. Dec;11(1):1-9. Kuhlman C, Korkmaz G, Ravi SS, Vega-Redondo F (2021)

[88] Realistic Commodity Flow Networks to Assess Vulnerability of Food Systems. Proceedings of the International Conference on Complex Networks and Their Applications. Nov 30;168-179. Springer, Cham. Adiga A, Palmer N, Sinha S, Waghalter P, Dave A, Lazarte D, Brévault T, Apolloni A, Mortveit H, Baek Y, Marathe M (2021)

[87] Versatile Uncertainty Quantification of Contrastive Behaviors for Modeling Networked Anagram Games. Proceedings of the International Conference on Complex Networks and Their Applications. Nov 30;644-656. Springer, Cham. Hu Z, Deng X, Kuhlman C (2021)

[86] A framework for simulating multiple contagions over multiple networks. Proceedings of the International Conference on Complex Networks and Their Applications. Nov 30;241-252. Springer, Cham. Kishore A, Machi L, Kuhlman C, Machi D, Ravi SS (2021)

[85] Racism is a virus: anti-Asian hate and counterspeech in social media during the COVID-19 crisis. Proceedings of the 2021 IEEE/ACM International Conference on Advances in Social Networks Analysis and Mining. Nov 8;90-94. He B, Ziems C, Soni S, Ramakrishnan N, Yang D, Kumar S (2021)

[84] Population immunity against COVID-19 in the United States. Annals of Internal Medicine. Nov;174(11):1586-91. Moghadas S, Sah P, Shoukat A, Meyers L, Galvani A (2021)

[83] SMORE: Knowledge Graph Completion and Multi-hop Reasoning in Massive Knowledge Graphs. arXiv:2110.14890. Oct 28. Ren H, Dai H, Dai B, Chen X, Zhou D, Leskovec J, Schuurmans D (2021)

[82] Actionable Insights in Urban Multivariate Time-series. Proceedings of the 30th ACM International Conference on Information & Knowledge Management. Oct 26;1774-1783. Tabassum A, Chinthavali S, Tansakul V, Prakash BA (2021)

[81] Phase transitions and the theory of early warning indicators for critical transitions. arXiv:2110.12287. Oct 23. Hagstrom G, Levin S (2021)

[80] Epidemiological and Economic Impact of COVID-19 in the US. Scientific Reports. Oct 14;11(1). Chen J, Vullikanti A, Santos J, Venkatramanan S, Hoops S, Mortveit H, Lewis B, You W, Eubank S, Marathe M, Barrett C (2021)

[79] Asymptomatic individuals can increase the final epidemic size under adaptive human behavior. Scientific Reports. Oct 5;11(1). Espinoza B, Marathe M, Swarup S, Thakur M (2021)

[78] Postmortem memory of public figures in news and social media. Proceedings of the National Academy of Sciences. Sep 21;118(38). West R, Leskovec J, Potts C (2021)

[77] Spatiotemporal Pattern Mining for Nowcasting Extreme Earthquakes in Southern California. Proceedings of the IEEE 17th International Conference on eScience. Sep 20. Feng B, Fox G (2021)

[76] Importance of non-pharmaceutical interventions in the COVID-19 vaccination era: A case study of the Seychelles. Journal of Global Health. Sep 18;11:03104. Vilches T, Sah P, Abdollahi E, Moghadas S, Galvani A (2021)

[75] Privacy-first health research with federated learning. NPJ Digital Medicine. Sep 7;4(1):1-8. Sadilek A, Liu L, Nguyen D, Kamruzzaman M, Serghiou S, Rader B, Ingerman A, Mellem S, Kairouz P, Nsoesie E, MacFarlane J (2021)

[74] HySec-Flow: Privacy-Preserving Genomic Computing with SGX-based Big-Data Analytics Framework. Proceedings of the 2021 IEEE 14th International Conference on Cloud Computing (CLOUD). Sep 5; 733-743. Widanage C, Liu W, Li J, Chen H, Wang X, Tang H, Fox J (2021)

[73] HPTMT: Operator-Based Architecture for Scalable High-Performance Data-Intensive Frameworks. Proceedings of the 2021 IEEE 14th International Conference on Cloud Computing (CLOUD). Sep 5;228-239. Kamburugamuve S, Widanage C, Perera N, Abeykoon V, Uyar A, Kanewala T, Von Laszewski G, Fox G (2021)

[72] Asymptomatic SARS-CoV-2 infection: A systematic review and meta-analysis. Proceedings of the National Academy of Sciences. Aug 24;118(34). Sah P, Fitzpatrick M, Zimmer C, Abdollahi E, Juden-Kelly L, Moghadas S, Singer B, Galvani A (2021)

[71] SARS-CoV-2 infection and mortality during the first epidemic wave in Madurai, south India: a prospective, active surveillance study. The Lancet Infectious Diseases. Aug 13. Laxminarayan R, Vinay T, Kumar K, Wahl B, Lewnard J (2021)

[70] Can the USA return to pre-COVID-19 normal by July 4? The Lancet Infectious Diseases. Aug 1;21(8):1073-4. Moghadas S, Sah P, Vilches T, Galvani A (2021)

[69] Opportunities and challenges in developing COVID-19 simulation models: Lessons from six funded projects. Proceedings of the 2021 Annual Modeling and Simulation Conference (ANNSIM). Society for Modeling & Simulation International. July 19. Giabbanelli P, Badham J, Castellani B, Kavak H, Mago V, Negahba A, Swarup S (2021)

[68] Informing University COVID-19 Decisions Using Simple Compartmental Models. medRxiv. July 6. Hurt B, Adiga A, Marathe M, Barrett C (2021)

[67] Challenges facing COVID-19 vaccination in India: Lessons from the initial vaccine rollout. Journal of Global Health. Jun 26;11:03083. Pandey A, Sah P, Moghadas S, Mandal S, Banerjee S, Hotez P, Galvani A (2021)

[66] Evolution of an asymptomatic first stage of infection in a heterogeneous population. Journal of the Royal Society Interface. Jun 16;18(179):20210175. Saad-Roy C, Grenfell B, Levin S, van den Driessche P, Wingreen N (2021)

[65] Evaluating the utility of high-resolution proximity metrics in predicting the spread of COVID-19. medRxiv. Jun 10. Mehrab Z, Adiga A, Marathe M, Venkatramanan S, Swarup S (2021)

[64] Leveraging a multiple-strain model with mutations in analyzing the spread of COVID-19. ICASSP 2021-2021 IEEE International Conference on Acoustics, Speech and Signal Processing. Jun 6;8163-8167. Sridhar A, Yağan O, Eletreby R, Levin S, Plotkin J, Poor HV (2021)

[63] Strategies to Mitigate COVID-19 Resurgence Assuming Immunity Waning: A Study for Karnataka, India. medRxiv. May 29. Adiga A, Athreya S, Lewis B, Marathe M, Rathod N, Sundaresan R, Swarup S, Venkatramanan S, Yasodharan S (2021)

[62] Steering a Historical Disease Forecasting Model Under a Pandemic: Case of Flu and COVID-19. Proceedings of the AAAI Conference on Artificial Intelligence. May 18;35(6):4855-4863. Rodriguez A, Muralidhar N, Adhikari B, Tabassum A, Ramakrishnan N, Prakash BA (2021)

[61] Scalable epidemiological workflows to support covid-19 planning and response. Proceedings of the IEEE International Parallel and Distributed Processing Symposium. May 17;639-650). Machi D, Bhattacharya P, Hoops S, Chen J, Mortveit H, Venkatramanan S, Lewis B, Wilson M, Fadikar A, Maiden T, Barrett C (2021)

[60] Quantifying the potential for dominant spread of SARS-CoV-2 variant B. 1.351 in the United States. medRxiv. May 12. Sah P, Vilches T, Shoukat A, Pandey A, Fitzpatrick M, Moghadas S, Galvani A (2021)

[59] Social Network Interventions to Prevent Reciprocity-driven Polarization. Proceedings of the 20th International Conference on Autonomous Agents and MultiAgent Systems. May 3;1643-1645. Santos F, Santos F, Pacheco J, Levin S (2021)

[58] Cohorting to isolate asymptomatic spreaders: An agent-based simulation study on the Mumbai Suburban Railway. Proceedings of the 20th International Conference on Autonomous Agents and MultiAgent Systems. May 3;1680-1682. Talekar A, Shriram S, Vaidhiyan N, Aggarwal G, Chen J, Venkatramanan S, Wang L, Adiga A, Sadilek A, Tendulkar A, Marathe M (2021)

[57] Analysis of the potential impact of durability, timing, and transmission blocking of COVID-19 vaccine on morbidity and mortality. EClinicalMedicine. May 1;35:100863. Haghpanah F, Lin G, Levin S, Klein E (2021)

[56] Accelerated vaccine rollout is imperative to mitigate highly transmissible COVID-19 variants. EClinicalMedicine. May 1;35:100865. Sah P, Vilches T, Moghadas S, Fitzpatrick M, Singer B, Hotez P, Galvani A (2021)

[55] Simulated identification of silent COVID-19 infections among children and estimated future infection rates with vaccination. JAMA Network Open. Apr 23;4(4):e217097. Moghadas S, Fitzpatrick M, Shoukat A, Zhang K, Galvani A (2021)

[54] Evaluation of COVID-19 vaccination strategies with a delayed second dose. PLoS Biology. Apr 21;19(4):e3001211. Moghadas S, Vilches T, Zhang K, Nourbakhsh S, Sah P, Fitzpatrick M, Galvani A (2021)

[53] Optimal, near-optimal, and robust epidemic control. Communication Physics. Apr 20;4(78). Morris D, Rossine F, Plotkin J, Levin S (2021)

[52] Comparison of Regression Approaches for Analyzing Survival Data in the Presence of Competing Risks. Letters in Biomathematics. Apr 15;8(1):29-47. Ghosh S, Samanta G, Mubayi A (2021)

[51] Timing is everything: the relationship between COVID outcomes and the date at which mask mandates are relaxed. medRxiv. Apr 6. Shoukat A, Galvani A, Fitzpatrick M (2021)

[50] Simulated identification of silent COVID-19 infections among children and estimated future infection rates with vaccination. JAMA Network Open. Apr 1;4(4):e217097-. Moghadas S, Fitzpatrick M, Shoukat A, Zhang K, Galvani A (2021)

[49] Modeling and analysis of the spread of COVID-19 under a multiple-strain model with mutations. Harvard Data Science Review. Apr 23. Osman Y, Sridhar A, Eletreby R, Levin S, Plotkin J, Poor HV (2021)

[48] Epidemiological and evolutionary considerations of SARS-CoV-2 vaccine dosing regimes. Science. Apr 23;372(6540):363-70. Saad-Roy C, Morris S, Metcalf C, Mina M, Baker R, Farrar J, Holmes E, Pybus O, Graham A, Levin S, Grenfell B (2021)

[47] AICov: An Integrative Deep Learning Framework for COVID-19 Forecasting with Population Covariates. Journal of Data Science. Apr;19(2):293-313. Fox G, von Laszewski G, Wang F, Pyne S (2021)

[46] WiFi mobility models for COVID-19 enable less burdensome and more localized interventions for university campuses. medRxiv. Mar 24. Swain V, Xie J, Madan M, Sargolzaei S, Cai J, De Choudhury M, Abowd G, Steimle L, Prakash BA.

[45] Epidemiological and evolutionary considerations of SARS-CoV-2 vaccine dosing regimes. Science. Mar 9;10.1126/science.abg8663. Saad-Roy C, Morris S, Metcalf C, Mina M, Baker R, Farrar J, Holmes E, Pybus O, Graham A, Levin S, Grenfell B, Wagner C (2021)

[44] Racial disparities in COVID-19 mortality across Michigan, United States. EClinicalMedicine. Mar 1;33:100761. Parpia A, Martinez I, El-Sayed A, Wells C, Myers L, Duncan J, Collins J, Fitzpatrick M, Galvani A, Pandey A (2021)

[43] Prioritizing allocation of COVID-19 vaccines based on social contacts increases vaccination effectiveness. medRxiv. Feb 15. Chen J, Hoops S, Marathe A, Mortveit H, Lewis B, Venkatramanan S, Haddadan A, Bhattacharya P, Adiga A, Vullikanti A, Srinivasan A, Wilson M, Ehrlich G, Fenster M, Eubank S, Barrett C, Marathe M (2021)

[42] Persistence of anti-vaccine sentiment in social networks through strategic interactions. Proceedings of the Thirty-Fifth AAAI Conference on Artificial IntelligenceFeb 9. Haque ASM, Thakur M, Bielskas M, Marathe A, Vullikanti A (2021)

[41] DeepCOVID: An Operational Deep Learning-driven Framework for Explainable Real-time COVID-19 Forecasting. Proceedings of the Thirty-Fifth AAAI Conference on Artificial IntelligenceFeb 9. Rodríguez A, Tabassum A, Cui J, Xie J, Ho J, Agarwal P, Adhikari B, Prakash BA (2021)

[40] Steering a Historical Disease Forecasting Model Under a Pandemic: Case of Flu and COVID-19. Proceedings of the Thirty-Fifth AAAI Conference on Artificial IntelligenceFeb 9. Rodriguez A, Muralidhar N, Adhikari B, Tabassum A, Ramakrishnan N, Prakash BA (2021)

[39] Evaluation of individual and ensemble probabilistic forecasts of COVID-19 mortality in the US. medRxiv. Feb 5. Cramer EY, et al (2021)

[38] Trajectory of individual immunity and vaccination required for SARS-CoV-2 community immunity: a conceptual investigation. Journal of the Royal Society Interface. Feb 3;18(175):20200683. Saad-Roy C, Levin S, Metcalf C, Grenfell B (2021)

[37] Supporting COVID-19 policy response with large-scale mobility-based modeling. Proceedings of the 27th ACM SIGKDD Conference on Knowledge Discovery and Data Mining (KDD), Applied Data Science Track. Submitted. Chang S, Wilson M, Lewis B, Mehrab Z, Dudakiya K, Pierson E, Koh P, Gerardin J, Redbird B, Grusky D, Marathe M, Leskovec J (2021)

[36] All Models are Useful: Bayesian Ensembling for Robust High Resolution COVID-19 Forecasting. Proceedings of the 27th ACM SIGKDD Conference on Knowledge Discovery and Data Mining (KDD), Applied Data Science Track. Adiga A, Wang L, Hurt B, Peddireddy A, Porebski P, Venkatramanan S, Lewis B, Marathe M (2021)

[35] The impact of vaccination on coronavirus disease 2019 (COVID-19) outbreaks in the United States. Clinical Infectious Diseases. Jan 30. Moghadas S, Vilches T, Zhang K, Wells C, Shoukat A, Singer B, Meyers L, Neuzil K, Langley J, Fitzpatrick M, Galvani A (2021)

[34] Adaptive human behavior in epidemics: the impact of risk misperception on the spread of epidemics. Submitted. Espinoza B, Marathe M, Swarup S, Thakur M (2021)

[33] Superinfection and the evolution of an initial asymptomatic stage. Royal Society Open Science. Jan 27;8(1):202212. Saad-Roy C, Grenfell B, Levin S, Pellis L, Stage H, van den Driessche P, Wingreen N (2021)

[32] Cross-country evidence on the association between contact tracing and COVID-19 case fatality rates. Scientific Reports. Jan 25;11(1):1-6. Yalaman A, Basbug G, Elgin C, Galvani A (2021)

[31] Optimal COVID-19 quarantine and testing strategies. Nature Communications. Jan 7;12(1):1-9. Wells C, Townsend J, Pandey A, Moghadas S, Krieger G, Singer B, McDonald R, Fitzpatrick M, Galvani A (2021)

[30] Economic and behavioral influencers of vaccination and antimicrobial use. Frontiers in Public Health. Dec 21;8: 614113. Wagner C, Prentice J, Saad-Roy C, Yang L, Grenfell B, Levin S, Laxminarayan R (2020)

[29] Using Mobility Data to Understand and Forecast COVID19 Dynamics. medRxiv. Dec 15. Wang L, Ben X, Adiga A, Sadilek A, Tendulkar A, Venkatramanan S, Vullikanti A, Aggarwal G, Talekar A, Chen J, Lewis B, Swarup S, Kapoor A, Tambe M, Marathe M (2020)

[28] Mapping network states using connectivity queries. Proceedings of IEEE International Conference on Big Data. Dec 10. Rodríguez A, Adhikari B, González A, Nicholson C, Vullikanti A, Prakash BA (2020)

[27] Examining Deep Learning Models with Multiple Data Sources for COVID-19 Forecasting. Proceedings of IEEE International Conference on Big Data. Dec 10;3846-3855. Wang L, Adiga A, Venkatramanan S, Chen J, Lewis B, Marathe M (2020)

[26] Evolution of similar configurations in graph dynamical systems. International Conference on Complex Networks and Their Applications. Dec 1;544-555. Priest J, Marathe M, Ravi SS, Rosenkrantz D, Stearns R (2020)

[25] Blocking the Propagation of Two Simultaneous Contagions over Networks. International Conference on Complex Networks and Their Applications. Dec 1;455-468. Carscadden H, Kuhlman C, Marathe M, Ravi SS, Rosenkrantz D (2020)

[24] High resolution proximity statistics as early warning for US universities reopening during COVID-19. medRxivMehrab Z, Ranga A, Sarkar D, Venkatramanan S, Baek Y, Swarup S, Marathe M (2020)

[23] Data-driven modeling for different stages of pandemic response. Journal of the Indian Institute of Science. Nov 16;100:901-915. Adiga A, Chen J, Marathe M, Mortveit H, Venkatramanan S, Vullikanti A (2020)

[22] Immune life history, vaccination, and the dynamics of SARS-CoV-2 over the next 5 years. Science. Nov 13;370(6518):811-8. Saad-Roy C, Wagner C, Baker R, Morris S, Farrar J, Graham A, Levin S, Mina M, Metcalf C, Grenfell B (2020)

[21] Wisdom of the Ensemble: Improving Consistency of Deep Learning Models. Advances in Neural Information Processing Systems. Dec 6;33:19750-61. Wang L, Ghosh D, Gonzalez Diaz M, Farahat A, Alam M, Gupta C, Chen J, Marathe M (2020)

[20] Mobility network models of COVID-19 explain inequities and inform reopening. Nature. Nov 10;1-6. Chang S, Pierson E, Koh P, Gerardin J, Redbird B, Grusky D, Leskovec J (2020)

[19] PREEMPT: Scalable Epidemic Interventions Using Sub-Modular Optimization on Multi-GPU Systems. Proceedings of SC20: International Conference for High Performance Computing, Networking, Storage, and Analysis (IEEE). Nov 9;765-779. Minutoli M, Sambaturu P, Halappanavar M, Tumeo A, Kalyanaraman A, Vullikanti A (2020)

[18] Epidemiology and transmission dynamics of COVID-19 in two Indian states. Science. Nov 6;370(6517):691-697. Laxminarayan R, Wahl B, Reddy Dudala S, Gopal K, Mohan C, Neelima S, Jawahar Reddy K, Radhakrishnan J, Lewnard J (2020)

[17] Medical costs of keeping the US economy open during COVID-19. Scientific Reports. Oct 28;10(1):1-0. Chen J, Vullikanti A, Hoops S, Mortveit H, Lewis B, Venkatramanan S, You W, Eubank S, Marathe M, Barrett C, Marathe A (2020)

[16] Mathematical Models for COVID-19 Pandemic: A Comparative Analysis. Journal of the Indian Institute of Science. Oct 30;100:793-807. Adiga A, Dubhashi D, Lewis B, Marathe M, Venkatramanan S, Vullikanti A (2020)

[15] Commentary on Ferguson, et al, "Impact of Non-pharmaceutical Interventions (NPIs) to Reduce COVID-19 Mortality and Healthcare Demand. Bulletin of Mathematical Biology 82Oct 7. Eubank S, Eckstrand I, Lewis B, Venkatramanan S, Marathe M, Barrett C (2020)

[14] Broadcasting on two-dimensional regular grids. arXiv:2010.01390. Oct 3. Makur A, Mossel E, Polyanskiy Y (2020)

[13] Distance Encoding--Design Provably More Powerful GNNs for Structural Representation Learning. arXiv:2009.00142. Aug 31. Li P, Wang Y, Wang H, Leskovec J (2020)

[12] OCEAN: Online Task Inference for Compositional Tasks with Context Adaptation. Conference on Uncertainty in Artificial Intelligence. Aug 27;1378-1387. PMLR. Ren H, Zhu Y, Leskovec J, Anandkumar A, Garg A (2020)

[11] Interplay of global multi-scale human mobility, social distancing, government interventions, and COVID-19 dynamics. medRxiv. Aug 24. Adiga A, Wang L, Sadilek A, Tendulkar A, Venkatramanan S, Vullikanti A, Aggarwal G, Talekar A, Ben X, Chen J, Lewis B, Swarup S, Tambe M, Marathe M (2020)

[10] Incorporating Expert Guidance in Epidemic Forecasting. CM SIGKDD Epidemiology meets Data Mining and Knowledge Workshop. Aug 24. Rodríguez A, Adhikari B, Ramakrishnan N, Prakash BA (2020).

[9] Ensemble Forecasts of Coronavirus Disease 2019 (COVID-19) in the US. medRxivAug 22. Ray E, et al (2020)

[8] Approximation Algorithms for Radius-Based, Two-Stage Stochastic Clustering Problems with Budget Constraints. arXiv:2008.03325. Aug 7. Brubach B, Grammel N, Harris D, Srinivasan A, Tsepenekas L, Vullikanti A (2020)

[7] Cut-n-Reveal: Time Series Segmentations with Explanations. ACM Transactions on Intelligent Systems and Technology (TIST). Jul 28;11(5):1-26. Muralidhar N, Tabassum A, Chen L, Chinthavali S, Ramakrishnan N, Prakash BA (2020)

[6] The implications of silent transmission for the control of COVID-19 outbreaks. Proceedings of the National Academy of Sciences. Jul 28;117(30):17513-17515. Moghadas S, Fitzpatrick M, Sah P, Pandey A, Shoukat A, Singer B, Galvani A (2020)

[5] Implications of localized charge for human influenza A H1N1 hemagglutinin evolution: Insights from deep mutational scans. PLoS Computational Biology. Jun 25;16(6):e1007892. Saad-Roy C, Arinaminpathy N, Wingreen N, Levin S, Akey J, Grenfell B (2020)

[4] Networked epidemiology for COVID-19. SIAM News. Jun 1Chen J, Eubank S, Levin S, Mortveit H, Venkataramanan S, Vullikanti A, Marathe M (2020)

[3] Staggered Release Policies for COVID-19 Control: Costs and Benefits of Sequentially Relaxing Restrictions by Age. arXiv. May 12. Zhao H, Feng Z, Castillo-Chavez C, Levin S (2020)

[2] COVID-19: Regression Approaches of Survival Data in the Presence of Competing Risks: an Application to COVID-19. Letters in Biomathematics, May. Ghosh S, Samanta G, Mubayi A (2020)

[1] Explaining the "bomb-like" dynamics of COVID-19 with modeling and implications for policy. medRxivLin G, Strauss A, Pinz M, Martinez D, Tseng K, Schueller E, Gatalo O, Yang Y, Levin S, Klein E (2020)

 

 

Presentations

Representation Learning for Logical Reasoning in Knowledge Graphs. Automated Knowledge Base Construction. Leskovec J (June 2020)

A Lab of One's Own: One Woman's Personal Journey Through Sexism in Science. Harvard Science Book Talk. Colwell R (Sept 2020)

Real-Time Computational Science for COVID-19 Pandemic Planning and Response. ACM BCB 2020. Marathe M (Sept 2020)

Projecting hospital utilization and assessing implications of silent transmission during the COVID-19 outbreak in the United States. COVID-19 Consortium Colloquium Speaker Series, UT Austin. Galvani A and Pandey A (Sept 2020)

Robustness meets Algorithms. Trustworthy and Robust AI Collaboration (TRAC) Workshop. Moitra A (June 2020)

Graph Structure of Neural Networks: Good Neural Networks Are Alike. MLG20. Leskovec J (Aug 2020)

Predicting and Analyzing Pandemics. Technology, Culture and Society in the Age of COVID-19 Continuing Studies Course, Rice University. Marathe M (Oct 2020)

Graph Neural Networks for Reasoning over Multimodal Content. ML4MD at ICML2020. Leskovec J (July 2020)

Towards real-time computational epidemiology. Workshop on Knowledge Guided Machine Learning (KGML). Marathe M (Aug 2020)

Uncertainty & Precision in Math Modeling to Mitigate the Threat of COVID-19. Mathematical Models on Epidemiology in Connection with COVID-19, Dept of Mathematics, Vellore Institute of Technology, TN, India. Mubayi A (June 2020)

Underreporting, Preparedness, and Silent Typhoid Marys: A Cautionary Tale of Modeling COVID Dynamics. COVID-19 Modeling Webinar Series, Indian Institute of Public Health, Gandhinagar, India. Mubayi A (June 2020)

Responding to the COVID-19 Pandemic: Role of Computing and Data Science. IIT Madras Leadership Lecture Series. Marathe M (May 2020)

Tackling the COVID-19 Crisis. UVA Research virtual panel. Marathe M (May 2020)

Computational and Statistical Tools to Control a Pandemic. Theoretically Speaking Series, Simons Institute for the Theory of Computing. Team members on the virtual panel: Moitra A, Marathe M, Vullikanti A (May 2020)

Computational Science for Real-time COVID-19 Response. ACM India Industry Webinar. Marathe M (Apr 2020)

Recommendations for Improving Science During Crisis. AAAS Annual Meeting. Colwell R (Feb 2020)